This website uses cookies to store information on your computer. Some of these cookies are used for visitor analysis, others are essential to making our site function properly and improve the user experience. By using this site, you consent to the placement of these cookies. Click Accept to consent and dismiss this message or Deny to leave this website. Read our Privacy Statement for more.
Sofie Van Gassen

Sofie Van Gassen

Postdoctoral Researcher
VIB-UGent Center for Inflammation Research
Ghent, Belgium

BSc Computer Science, Ghent University, 2011 MSc Mathematical Computer Science, Ghent University, 2013 PhD Computer Science Engineering, Ghent University, 2017

Scientific Interest and Avenues for Collaboration
My main research interest is the design of computational solutions for single-cell data analysis. During my PhD, I developed the FlowSOM and FloReMi algorithms for flow cytometry visualization and biomarker discovery, and I am still improving them further. Currently, I am also developing machine learning algorithms for mass cytometry and imaging cytometry datasets. I am especially interested in collaborations with wet lab scientists who are exploring questions to which the current computational tools do not provide the answers yet and who want to explore new machine learning approaches.

Participation/Support of ISAC

  • CYTO 2017 Oral presentation
  • CYTO 2016 Poster presentation
  • CYTO 2015 Poster presentation
  • CYTO 2014 Poster presentation